IMAGING SCIENCE

IMAGE ANNOTATION WORKFLOW

Research Processes

Superpowers of meta data

With the development of diagnostic imaging devices, large amounts of digital high-res and 3D images are generated every day. The requirements of effective indexing and searching image are growing rapidly. Image annotation is an effective way for content-based image retrieval.

Different categories for image annotation.
Different methods for image annotation under Semi-Automatic and Automatic annotations.

Manual annotation is a costly and time-consuming work, especially for mobile device.

infographic-image-annotation

Related Workflows

High Content Screening

High-content screening (HCS), also known as high-content analysis (HCA) or cellomics, is a method that is used in early development stages and drug discovery to typically identify substances such as small molecules, peptides, or relevant RNAi that can lead into development candidates for future medicines.

Image Annotation

CRO Collaboration

The last few years have seen tremendous consolidation in both the pharmaceutical and contract research industries. The impact among pharma companies has created a heightened demand for productivity.

Remote Image Analysis

Post implementation training services relate often to process changes. With training services implementations are ready for success. The Learning Management System (LMS) typically handles the processes related to ramp-up and adoption planning after larger implementations.

CONTACT US

For further information please contact us, we look forward to hearing from you.

arivis-Vision4D

Your modular software toolkit for extracting results from scientific images. Adjusts to hardware for maximum power and smooth interactivity on microscopy datasets of virtually unlimited size. Vision4D unites multiple tools for visualization and advanced analysis into one easy-to-learn user environment for highly productive productive workflows. Extend your possibilities directly via Python and connect to a multitude of applications via supported libraries and APIs.

Advanced AI analysis

Machine Learning & Deep Learning Workflows

Tile Stitching

4D Tracking & Lineage

Data Transformation

Segmentation

Image Preprocessing & Enhancement

Interactive rendering of volumes and time-series

Cinematic high-resolution rendering

Batch application of Analysis Pipelines

Custom Computed Features of Objects

Exploration of Results overlaid on raw data

Details

arivis-VisionVR

Display real image data in Virtual Reality by utilizing patent pending direct volume rendering techniques with no need to convert data or make surface models. Directly use your hands to move, rotate, scale, and shape your digital image data. Interactively proofread, edit, track or segment multi-dimensional images from any microscopy technology. Perform productive and collaborative work in a truly immersive environment.

Smooth Rendering and Visualization

Best-in-class hardware support with OpenXR API

Collaboration via different VR Scenarios

Direct Volume Rendering

Productive workflows for faster results

Navigation in immersive Environment

Export Snapshots, Movies and 360°

Seamless Exchange with Desktop Application

Sculpting Tools to Add, Delete and Proof-read

Magic Wand Tools

Details

arivis-VisionHub

A nucleus of computational activity and collaboration at scale. VisionHub enables design and execution of large-scale experiments that produce results from images, whether datasets are already stored or are actively being produced. Mass quantities of microscopy data are onboarded and processed by a virtual team of computational workers. Smartly utilize processing cores in servers or workstations with the maximum speeds possible.

Manage access for users and groups

Import and archive datasets into the arivis framework

Create experiments that produce results at scale

Leverage computational resources onsite and offsite

Scalable pricing model to support bursts of throughput

Visualize massive image volumes via remote rendering servers

Implement quality checks for increased efficiency and validity

Smart optimization of parallelization

Details

Image Analysis Case Studies

Collected case studies and use cases in research microscopy:
Discover the power of the arivis image analysis platform with real-world applications!

All
Use Case
Case Study

TOUCH

Use Case AI Image Analysis for Volume Electron Microscopy

Automated and scalable AI Image Analysis

TOUCH

Case Study Mitochondria Analysis with Deep Learning

Deep Learning-based segmentation

TOUCH

Case Study Matryoshka Analysis

Gain a better understanding of how native chromatin is distributed in the nucleus

TOUCH

Use Case Membrane based segmentation

Define cell boundaries

TOUCH

Use Case Colocalization

Identify Relationships

TOUCH

Use Case Customizable Magic Wand

Create, edit, and build up segmentation objects

TOUCH

Use Case Color Settings

Highlight nuclear stain in a 4 channel image and Display volumes of vesicles in color code

TOUCH

Use Case Tracking

Tracking cells with Analysis Pipeline

TOUCH

Use Case Blob Finder

Measure volumes of cells using the Blob Finder

TOUCH

Use Case Visualization in charts and 4D Viewer

Advanced Object Selection and Coloring

TOUCH

Use Case Image analysis workflow for mining EM images

Rigorous GABA-post-embedding immunogold quantification

TOUCH

Use Case Identify objects in electron microscopy images

Faster results and higher accuracy

TOUCH

Case Study Gastrulation & Migration Phenotypes

Faster results and higher accuracy

TOUCH

Case Study Advanced 4D tracking of meiotic spindle dynamic

Tackling challenges in image analysis

TOUCH

Case Study The migration of interneurons in the developing mouse brain

Stitching and visualizing the mouse brain

TOUCH

Case Study Exploring whole organisms at single cell resolution

Extend digital what is too large to be imaged

INDUSTRIES

Biotech

Modern usage of 3D cell and tissue culture technology are these days used more frequently to work with living organism. 3D cell cultures today already are used instead of using expensive animal models. To view and analyse these complex structures Arvis has been developing over the last decade tools to help scientists to act faster and more accurate.

Pharma

Today discover, develop and produce drugs are becoming time critical for the success of a whole industry sector. Arivis and it’s TEAM is helping to shorten the evaluation of a new drug by delivering professional, scalable software solution to analyse and view complex imaging datasets

CRO

Contract research organisation provide to Pharmaceutical, biotechnology and medical device industry their outsourced services. To share efficient imaging results with their industry partner CRO often need to collaborate with their partner. Arivis 3D viewing and analysis software helps researchers to be more efficient in research process and collaborate their complex imaging results faster

CMO

Contract manufacturing organization needs professional and scalable imaging analysis solution in order to guaranty the quality level for Pharmaceutical industry will need today. To obtain this quality Arivis AG has developed imaging analysis tools to fulfil this high demand in imaging and Industry standards in QC/QA.