With Machine Learning and Deep Learning tools available in the ZEISS arivis scientific image analysis eco-system, segmentation of multi-channel images becomes quick and easy.
Your scientific expertise is enough to mark and classify structures of interest in your samples. Let The AI toolkit in the cloud train your neural network, then export your AI-trained model. Use the model to set up an end-to-end pipeline with a few clicks.
With arivis machine learning and deep learning tools, you get reliable results in hours instead of weeks or months.
When an imaging specialist designed a conventional algorithm it answers one specific question. A Machine Learning algorithm can be adapted to various questions by training it. The Machine Learning algorithm “learns” patterns and adapts itself.
The researcher need only annotate regions of interest in a small part of the image to train the model. By learning patterns, Machine Learning and Deep Learning tools learn to classify samples, and this information can be then used to identify structures in the entire image and also in other images.
Our Machine Learning workflow is easy to use and guides you through three simple steps.
Learn about multiple ways to use your AI-trained model.
This tutorial demonstrates how to use the arivis AI toolkit on ZEISS arivis Cloud (formerly APEER), with ZEN Intellesis and ZEISS arivis Pro (formerly Vision4D) for deep learning applications. ZEISS arivis product family supports the Open Neural Network Exchange (ONNX) and the ZEISS CZ models. ZEISS arivis Cloud enables easy model annotation and training without programming knowledge. You can create new models or combine existing ones into customized workflows. It is easy to set up end-to-end automated image analysis pipelines with ZEISS arivis Pro, based on the imported fully trained neural networks from various libraries and backends.
Hippocampus tissue section, transmission electron microscopy. 30 TEM sections with 309 mitochondria were manually annotated using ZEISS arivis Pro (formerly Vision4D, ver. 3.6). This manual annotation was used to train an ONNX U-Net model for automated segmentation, which was applied to the entire dataset. The mean intensity to volume ratio was then calculated to show differences in mitochondria phenotype. The results were shown as color-coded object classifications. The imaging data was kindly provided by Dr. Wendy Bautista, MD Ph.D., Barrow Neurological Institute, Phoenix Children’s Hospital.
Machine Learning and Deep Learning tools are fully integrated into the ZEISS arivis product line allowing researchers to combine segmentation results with other pipeline functionalities.
arivis Machine Learning and Deep Learning tools work for several different multi-dimensional images from many microscopy modalities:
All image formats are supported by ZEISS arivis will also be compatible with our AI functionalities. CZI, TIFF, JPG, PNG, TXM and all Bio-Formats compatible images.
The arivis Scientific Image Analysis Platform is a flexible computing universe that scales, parallelizes, and streamlines all imaging workflows. With arivis' easy sharing functions your organization can enjoy data proficiency and efficiency at new levels. arivis includes integrated toolsets that handle everything, from file storage format to project and user-specific computations, to reporting. The platform's hubs connect datasets and manage central imaging databases and raw data exposure, while also enabling Machine Learning and AI routines.
Extract results from your scientific images with ZEISS arivis Pro. Make the most of hardware power adjustments and smooth interactivity on microscopy datasets of virtually unlimited size. The software unites multiple tools for visualization and advanced analysis into one easy-to-learn user environment for high productivity. Extend your possibilities with the Python coding feature and a multitude of supported libraries and APIs. Optional Virtual Reality interface.