Tracking cells or subcellular particles in microscopic data can be challenging. The Tracking Module allows analysis of the movement of small (i.e. particle tracking) or large objects (e.g. nuclei, cells, organisms) over time in both 2D or 3D multichannel image sets of any size (100s of GBs or TBs). With arivis Vision4D we offer an easy to use approach with full control and interactivity at all steps.
The novel software architecture and algorithms delivers top performance on tracking analysis of complex biological data. Combined with our Machine Learning segmentation, tracking and lineage analysis of multidimensional data sets will become an easy task, without the need to be an expert in image analysis. arivis Vision4D allows you to create expert results and meaningful output data for any kind of tracking or lineage data sets. A manual track tool creates a track or branch interactively in the viewer by placing spots (using markers or Magic Wand). Use arivis Virtual Reality software to proofread and correct your automatically created results much more efficiently than ever before.
Several parameters and state-of-the-art algorithms allow fast and reproducible tracking which can be applied also on other data sets:
Several (color-coded) measurements within the resulting tracks including typical Lineage features, for example:
Cell Tracks of a developing fly embryo
Tracks of cells in a developing fly embryo color-coded by average track speed.
Image courtesy of Celia Smits, Stanislav Y. Shvartsman, Department of Molecular Biology, Princeton University acquired with Luxendo MuVi SPIM
The arivis Imaging Platform is a flexible computing universe for Imaging Science that scales, parallelizes, integrates and connects all imaging workflows, sparking organization-wide image data proficiency and efficiency at all levels. The integrated toolsets take care of everything from the file storage format to user and project-specific computations to reporting. The computational and management hubs that comprise the platform connect your datasets and take care of your central imaging databases and can expose data assets - including raw data and specified portions of raw data - to Machine Learning and AI routines.
Your modular software platform for extracting results from scientific images. Adjusts to your hardware for maximum power and smooth interactivity even with large image datasets of virtually unlimited size. Bring diverse tools into one environment and enable your users to connect them into productive workflows. Highly interactive for optimization and quality at every step. Extend Vision4D directly via Python and connect it to other applications via libraries.VisionVR Display real image data in Virtual Reality by utilizing patent-pending direct volume rendering techniques with no need to convert data or create surface models. Directly use your hands to move, rotate, scale, and shape your digital image data. Interactively proofread, edit, track or segment multi-dimensional images from nearly any source instrument. Discuss your findings and results worldwide in a collaborative connected environment.