AI, Machine Learning & Deep Learning

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From image to results in an easier way

With Machine Learning in arivis Vision4D the segmentation of multi-channel images becomes an easy task using the scientists expertise to mark and classify structures of interest without the need to be an image analysis expert:

 

  • Easy to use, guided workflow specifically for users with little knowledge in image analysis
  • Definition of expected results by labelling a few lines in the image
  • Creation of robust and reliable analysis results
  • Less time to results by re-use of trainings on other and multiple data sets
  • Fully integrated in the arivis Vision4D analysis module
  • Direct fast feedback with previews of results and probability maps
  • Much faster and more reproducible compared to manual segmentation
  • Also for experts worth a try when other algorithms fail or are very tedious

Why use Machine Learning

A conventional algorithm is designed by a specialist to answer exactly one question. In contrast, a Machine Learning algorithm can be adapted to a wide variety of questions, simply by training it. The Machine Learning algorithm “learns” patterns and adapts itself.

Machine Learning allows to use this expert knowledge of the user by drawing and classifying some samples of structures of interest into the image. The subsequent automatic training uses this information to automatically create the algorithm to be used to find these structures all over this and other images.

APPLICABLE Applicable to images of any number of dimension and unlimited size
EASY TO USE Easy to use and guided workflow, no coding required
FAST FEEDBACK Fast feedback during training with previews of results
EASILY SCALABLE Batch analysis compatible to easily scale your image analysis process

Workflow

Our new UI and the smooth workflow integration guides the customer in a few steps through the process:

1
TRAIN Use specific user knowledge to recognize and classify structures of interest
2
SAVE Save or further improve your training by adding more labels any time
3
APPLY Start segmentation with a single click or use the Batch Analysis Module to process hundreds of data sets at once
Free webinars on Machine Learning with Vision4D

How to use Machine Learning

Use Machine Learning-based segmentation in whole mouse brain light sheet data

Constanze Depp from Max Planck Institute of Experimental Medicine is presenting a whole brain quantification of amyloid plaque load using Machine Learning in arivis Vision4D.

Getting the most of Vision4D analysis tools and Machine Learning

Make the most of your data with Machine Learning: segmentation of multi-channel images to mark and classify structures of interest - no coding required.

Full integration in arivis Vision4D

Machine Learning in arivis Vision4D is fully integrated solution which allows to combine the segmentation results with any other functionality of the pipeline.

These include:

  • Filtering (e.g. on volumes, intensities, etc.)
  • Tracking
  • Grouping
  • Distance measurements
  • In addition, you can also use the probability map as a basis for a subsequent segmentation in the arivis Analysis Pipeline

arivis Machine Learning works for several different multi-dimensional images from many modalities in microscopy:

  • Fluorescence Microscopy
  • Superresolution Microscopy
  • Transmission Light or Label Free Microscopy
  • Confocal Microscopy
  • Light Sheet Microscopy
  • Electron Microscopy (2D and 3D)
  • X-ray Microscopy
  • CT and MRT images
All image formats supported by arivis Vision4D will also be compatible with Machine Learning. CZI, TIFF, JPG, PNG, TXM and all Bio-Formats compatible images.

The arivis Imaging Platform

The arivis Imaging Platform is a flexible computing universe for Imaging Science that scales, parallelizes, integrates and connects all imaging workflows, sparking organization-wide image data proficiency and efficiency at all levels. The integrated toolsets take care of everything from the file storage format to user and project-specific computations to reporting. The computational and management hubs that comprise the platform connect your datasets and take care of your central imaging databases and can expose data assets - including raw data and specified portions of raw data - to Machine Learning and AI routines.

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