Analysis

Analysis Pipeline for 2D/3D Segmentation and Tracking

A strength of arivis Vision4D is its capability to segment and track cells or other objects in data sets composed of even hundreds of time frames. Therefore arivis Vision4D provides a robust and fast tool for processing of image data gained from long-term time lapse experiments.

arivis Vision4D focusses on the immediate and easy access on operators and functions. The pipeline approach enables the novice user to quickly run a saved or newly built analysis application, while the image analysis expert is still empowered if desired to create even complex analysis routines. The iterative approach of arivis Vision4D allows to apply image processing filters & segmentations to a small ROI, a 3D/4D subset or the complete document. The effect of all operations and analysis steps can be reviewed separately on the fly. Here, the real time preview is the tool-of-choice for setting up an analysis routine even on large data sets, in 2D, in 3D or in 3D over time. Whether the Analysis Pipeline is applied to a small subset in 2D or a large volume in 3D/4D, arivis Vision4D immediately reacts to modifications and creates fast results, and allows to handle and process images at any scale.

 

arivis Vision4D Analysis_segment 3d objects over time

arivis Vision4D provides with the Analysis Pipeline a robust and fast tool for processing of image data gained from long-term timelapse experiments.

The arivis Vision4D Tracking Module allows tracking of objects throughout time series in both 2D or 3D multichannel image sets of any size

arivis batch analysis pipeline spindle poles full resolution

The Batch Analysis Module is used for unattended execution of a pre-configured arivis Analysis Pipeline on a series of images, on multiple documents, scopes, or regions. No programming skills are needed. 

 

Main Features:

  • Robust image analysis covering all aspects of image processing, analysis and visualization of results via desktop, web sharing or as an option in Virtual Reality
  • Analysis Pipeline can run on the entire data volume, on selected planes, timepoints or on specified image regions (ROIs)
  • Operations can be individually parametrized and performed step-by-step even backwards
  • Integrated Machine Learning for easy segmentation without the need for expert knowledge in image analysis
  • Easy to use Operations, such as the Blob Finder , Membrane-based Segmenter 
  • Flexible Classification, Compartmentalization, Distance measurements and Tracking 
  • Define your own analysis workflow and re-use the Analysis Pipelines on other data sets
  • Easy Import and Export of Objects with Open Source and other software
  • Option to use Virtual Reality to proofread and correct your automatically created results much more efficiently than ever before.