arivis Scientific Image Analysis

Volume Fusion

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Overcome Limitations of Volume Fusion

Some samples may be too large to be imaged in a single field of view at the desired resolution. Mosaic tiling can commonly workaround this limitation and the arivis Tile Sorter can conveniently stitch such images into a single large volume. In some cases mosaic tiling may not be sufficient and it may be necessary to move/turn the sample to image the complete volume which can prevent stitching methods that rely on translation alone. The new arivis Volume Fusion Module overcomes these limitations and allows to fuse volumes based on landmarks and/or the free movement, rotation and scaling of a surface representation.

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Image Courtesy of vDisco technology, Ertürk Lab, Institute for Stroke and Dementia Research, Klinikum der Universität München, Munich, Germany

Benefits and Applications

  • Fusing a number of large data sets into one huge data set
  • Easy analysis of the complete sample in one data set
  • Measurement of long structures (neurons and vessels) using ZEISS arivis Pro VR (formerly VisionVR), even in large tissues which are usually too big for a single microscope field of view
  • Merge volumes as separate channels for multimodal imaging
  • Create a single large 3D data set from multiple sub volumes
  • Work around light penetration issues in light sheet microscopy by combining different views
  • Combine different imaging modalities or resolutions of the same sample

The arivis Image Analysis Platform

The arivis Scientific Image Analysis Platform is a flexible computing universe that scales, parallelizes, and streamlines all imaging workflows. With arivis' easy sharing functions your organization can enjoy data proficiency and efficiency at new levels. arivis includes integrated toolsets that handle everything, from file storage format to project and user-specific computations, to reporting. The platform's hubs connect datasets and manage central imaging databases and raw data exposure, while also enabling Machine Learning and AI routines.

placeholder40px ZEISS arivis Hub A nucleus of computational activity and collaboration at scale. ZEISS arivis Hub enables design and execution of large-scale experiments that produce results from images, whether datasets are already stored or are actively being produced. Mass quantities of microscopy data are onboarded and processed by a virtual team of computational workers. Smartly utilize processing cores in servers or workstations with maximum possible speed.  
placeholder40px ZEISS arivis Pro

Extract results from your scientific images with ZEISS arivis Pro. Make the most of hardware power adjustments and smooth interactivity on microscopy datasets of virtually unlimited size. The software unites multiple tools for visualization and advanced analysis into one easy-to-learn user environment for high productivity. Extend your possibilities with the Python coding feature and a multitude of supported libraries and APIs. Optional Virtual Reality interface.

placeholder40px ZEISS arivis Cloud Train Deep Learning models to automate your image analysis in ZEISS arivis Cloud (formerly APEER). Whether you use standard pipelines for routine tasks or create your own application, you can power your research with AI with just a few clicks. You can train your own model or alternatively, select a pre-defined pipeline and use a previously trained model on your images. The AI-trained models can be used with other ZEISS software products. Read More

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